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InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
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SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
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chipseq

mag

rnaseq

sarek

eager

atacseq
Mentions
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 Stars Project Description
14 780
rnaseq
 RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
5 338
sarek
 Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
1 318
patterns
 A curated collection of Nextflow implementation patterns
2 182
mag
 Assembly and binning of metagenomes
1 172
chipseq
 ChIP-seq peak-calling, QC and differential analysis pipeline.
2 160
atacseq
 ATAC-seq peak-calling and QC analysis pipeline
1 124
eager
 A fully reproducible and state-of-the-art ancient DNA analysis pipeline
1 77
configs
 Config files used to define parameters specific to compute environments at different Institutions
1 62
rnaseq-nf
 A proof of concept of RNAseq pipeline
1 56
rare-disease-wf
 (WIP) best-practices workflow for rare disease
1 52
hlatyping
 Precision HLA typing from next-generation sequencing data
1 11
GATK
 Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
1 3
dragen-variant-calling
 Variant calling pipeline for the Illumina Dragen platform
1 0
MSAR-core_bulkRNAseq
 bulkRNAseq in nextflow

Popular Nextflow Topics

nextflow nf-core Pipeline Workflow Bioinformatics Genomics rnaseq Annotation rna-seq metagenomics rna Conda binning Configuration chromatin-immunoprecipitation chromatin-accessibiity atac-seq ancient-dna-analysis germline chip-seq Genome hla hla-typing immunology Chip

Latest Mentions

Latest mentioned Nextflow repos
Stars Project
780 rnaseq
0 MSAR-core_bulkRNAseq
338 sarek
160 atacseq
172 chipseq
3 dragen-variant-calling
182 mag
11 GATK
52 hlatyping
56 rare-disease-wf
124 eager
77 configs
28 rnatoy
62 rnaseq-nf
318 patterns

Latest Discoveries

Latest discovered Nextflow repos
Stars Project
0 MSAR-core_bulkRNAseq
172 chipseq
3 dragen-variant-calling
160 atacseq
11 GATK
56 rare-disease-wf
52 hlatyping
780 rnaseq
182 mag
124 eager
77 configs
28 rnatoy
338 sarek
62 rnaseq-nf
318 patterns

Recently updated posts

  • Point of using Hisat2 build to index reference genomes when working with known genomes mouse/human?

    1 project | /r/bioinformatics

  • I used featureCounts to quantify RNA-seq reads and got a low successful alignment percentage. Is this a problem?

    1 project | /r/bioinformatics

  • mRNA-seq Read Length Selection

    1 project | /r/bioinformatics

  • Recommendations for software or online resources

    1 project | /r/bioinformatics

  • How to know where to align if I have RNAseq data??

    1 project | /r/bioinformatics
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