RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. (by nf-core)

Rnaseq Alternatives

Similar projects and alternatives to rnaseq based on common topics and language

  • GitHub repo HomeBrew

    rnaseq VS HomeBrew

    🍺 The missing package manager for macOS (or Linux)

  • GitHub repo sarek

    rnaseq VS sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • Nanos

    Run Linux Software Faster and Safer than Linux with Unikernels.

  • GitHub repo mag

    rnaseq VS mag

    Assembly and binning of metagenomes (by nf-core)

  • GitHub repo eager

    rnaseq VS eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • GitHub repo configs

    rnaseq VS configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  • GitHub repo rnatoy

    rnaseq VS rnatoy

    A proof of concept RNA-Seq pipeline with Nextflow

  • GitHub repo patterns

    rnaseq VS patterns

    A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html (by nextflow-io)

  • Scout APM

    Scout APM: A developer's best friend. Try free for 14-days. Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better rnaseq alternative or higher similarity.

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Reviews and mentions

Posts with mentions or reviews of rnaseq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-07.


Basic rnaseq repo stats
14 days ago

nf-core/rnaseq is an open source project licensed under MIT License which is an OSI approved license.

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