A curated collections of Nextflow implementation patterns -- (by nextflow-io)

Patterns Alternatives

Similar projects and alternatives to patterns based on common topics and language

  • GitHub repo rnaseq

    patterns VS rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  • GitHub repo sarek

    patterns VS sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • Scout APM

    Scout APM: A developer's best friend. Try free for 14-days. Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.

  • GitHub repo mag

    patterns VS mag

    Assembly and binning of metagenomes (by nf-core)

  • GitHub repo eager

    patterns VS eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • GitHub repo rnaseq-nf

    patterns VS rnaseq-nf

    A proof of concept of RNAseq pipeline

  • GitHub repo configs

    patterns VS configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  • GitHub repo rnatoy

    patterns VS rnatoy

    A proof of concept RNA-Seq pipeline with Nextflow

  • Nanos

    Run Linux Software Faster and Safer than Linux with Unikernels.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better patterns alternative or higher similarity.

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Reviews and mentions

Posts with mentions or reviews of patterns. We have used some of these posts to build our list of alternatives and similar projects.


Basic patterns repo stats
about 1 month ago

nextflow-io/patterns is an open source project licensed under MIT License which is an OSI approved license.

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