A curated collection of Nextflow implementation patterns (by nextflow-io)

Patterns Alternatives

Similar projects and alternatives to patterns based on common topics and language

  • rnaseq

    patterns VS rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  • sarek

    patterns VS sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • InfluxDB

    Build time-series-based applications quickly and at scale.. InfluxDB is the Time Series Platform where developers build real-time applications for analytics, IoT and cloud-native services. Easy to start, it is available in the cloud or on-premises.

  • chipseq

    patterns VS chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

  • atacseq

    patterns VS atacseq

    ATAC-seq peak-calling, QC and differential analysis pipeline

  • mag

    patterns VS mag

    Assembly and binning of metagenomes

  • eager

    patterns VS eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • configs

    patterns VS configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  • SonarLint

    Clean code begins in your IDE with SonarLint. Up your coding game and discover issues early. SonarLint is a free plugin that helps you find & fix bugs and security issues from the moment you start writing code. Install from your favorite IDE marketplace today.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better patterns alternative or higher similarity.

patterns reviews and mentions

Posts with mentions or reviews of patterns. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning patterns yet.
Tracking mentions began in Dec 2020.


Basic patterns repo stats
13 days ago

nextflow-io/patterns is an open source project licensed under MIT License which is an OSI approved license.

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