Patterns Alternatives

Similar projects and alternatives to patterns based on common topics and language

• rnaseq

  0 561 8.6 Nextflow patterns VS rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  

• sarek

  0 225 9.9 Nextflow patterns VS sarek

  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  

• InfluxDB

  www.influxdata.com

  sponsored

  Build time-series-based applications quickly and at scale.. InfluxDB is the Time Series Platform where developers build real-time applications for analytics, IoT and cloud-native services. Easy to start, it is available in the cloud or on-premises.

  

• chipseq

  0 138 10.0 Nextflow patterns VS chipseq

  ChIP-seq peak-calling, QC and differential analysis pipeline.

  

• atacseq

  0 129 0.0 Nextflow patterns VS atacseq

  ATAC-seq peak-calling, QC and differential analysis pipeline

  

• mag

  0 114 9.1 Nextflow patterns VS mag

  Assembly and binning of metagenomes

  

• eager

  0 86 8.9 Nextflow patterns VS eager

  A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  

• configs

  0 62 8.7 Nextflow patterns VS configs

  Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  

• SonarLint

  www.sonarlint.org

  sponsored

  Clean code begins in your IDE with SonarLint. Up your coding game and discover issues early. SonarLint is a free plugin that helps you find & fix bugs and security issues from the moment you start writing code. Install from your favorite IDE marketplace today.