Sarek Alternatives

Similar projects and alternatives to sarek

• GATK

  1 11 10.0 Nextflow sarek VS GATK

  Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

  

• galaxy

  4 1,310 10.0 Python sarek VS galaxy

  Data intensive science for everyone.

  

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• rnaseq-nf

  1 62 5.8 Nextflow sarek VS rnaseq-nf

  A proof of concept of RNAseq pipeline

  

• mag

  2 182 9.5 Nextflow sarek VS mag

  Assembly and binning of metagenomes

  

• rnatoy

  1 28 0.0 Nextflow sarek VS rnatoy

  Discontinued A proof of concept RNA-Seq pipeline with Nextflow

  

• configs

  1 77 9.7 Nextflow sarek VS configs

  Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  

• patterns

  1 316 4.5 Nextflow sarek VS patterns

  A curated collection of Nextflow implementation patterns (by nextflow-io)

  

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• eager

  1 125 7.8 Nextflow sarek VS eager

  A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  

• rnaseq

  14 770 9.5 Nextflow sarek VS rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  

• rare-disease-wf

  1 56 0.0 Nextflow sarek VS rare-disease-wf

  (WIP) best-practices workflow for rare disease