Nextflow nextflow

Open-source Nextflow projects categorized as nextflow
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Topics: nf-core Workflow Pipeline Bioinformatics Genomics
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Top 10 Nextflow nextflow Projects

  • rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Project mention: R pipelines for bulk RNA-seq analyses | /r/bioinformatics | 2023-12-09

  • sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Project mention: Recommendations for software or online resources | /r/bioinformatics | 2023-04-29

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  • patterns

    A curated collection of Nextflow implementation patterns (by nextflow-io)

  • mag

    Assembly and binning of metagenomes

  • chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

  • atacseq

    ATAC-seq peak-calling and QC analysis pipeline

  • eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  • configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  • rnaseq-nf

    A proof of concept of RNAseq pipeline

  • hlatyping

    Precision HLA typing from next-generation sequencing data

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-12-09.

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Index

What are some of the best open-source nextflow projects in Nextflow? This list will help you:

Project Stars
1 rnaseq 768
2 sarek 332
3 patterns 315
4 mag 182
5 chipseq 169
6 atacseq 159
7 eager 125
8 configs 77
9 rnaseq-nf 62
10 hlatyping 51

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