A proof of concept RNA-Seq pipeline with Nextflow (by nextflow-io)

Rnatoy Alternatives

Similar projects and alternatives to rnatoy based on common topics and language

  • GitHub repo rnaseq-nf

    rnatoy VS rnaseq-nf

    A proof of concept of RNAseq pipeline

  • GitHub repo rnaseq

    rnatoy VS rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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  • GitHub repo sarek

    rnatoy VS sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • GitHub repo patterns

    rnatoy VS patterns

    A curated collections of Nextflow implementation patterns -- http://nextflow-io.github.io/patterns/index.html (by nextflow-io)

  • GitHub repo mag

    rnatoy VS mag

    Assembly and binning of metagenomes (by nf-core)

  • GitHub repo eager

    rnatoy VS eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

  • GitHub repo configs

    rnatoy VS configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

  • Nanos

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better rnatoy alternative or higher similarity.

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Reviews and mentions

Posts with mentions or reviews of rnatoy. We have used some of these posts to build our list of alternatives and similar projects.
  • Nextflow RNA-seq pipeline
    1 project | reddit.com/r/bioinformatics | 27 Mar 2021
    While running the https://github.com/nextflow-io/rnatoy/blob/master/main.nf pipeline, it throws me an error at line 64 : No such variable: genome. I have tried googling this error but I haven't found anything helpful so far.


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11 months ago
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