rnatoy
A proof of concept RNA-Seq pipeline with Nextflow (by nextflow-io)
rnaseq-nf
A proof of concept of RNAseq pipeline (by nextflow-io)
| rnatoy | rnaseq-nf | |
|---|---|---|
| 1 | 1 | |
| 28 | 62 | |
| - | - | |
| 0.0 | 5.5 | |
| over 3 years ago | 22 days ago | |
| Nextflow | Nextflow | |
| - | Mozilla Public License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnatoy
Posts with mentions or reviews of rnatoy.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Nextflow RNA-seq pipeline
While running the https://github.com/nextflow-io/rnatoy/blob/master/main.nf pipeline, it throws me an error at line 64 : No such variable: genome. I have tried googling this error but I haven't found anything helpful so far.
rnaseq-nf
Posts with mentions or reviews of rnaseq-nf.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
What are some alternatives?
When comparing rnatoy and rnaseq-nf you can also consider the following projects:
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
configs - Config files used to define parameters specific to compute environments at different Institutions
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
patterns - A curated collection of Nextflow implementation patterns
rare-disease-wf - (WIP) best-practices workflow for rare disease