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Top 3 Nextflow Genomic Projects
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sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Nextflow Genomics related posts
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Recommendations for software or online resources
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Best somatic variant callers?
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GATK4 automated pipelines in existence?
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Ask HN: How to be my own genetic disease researcher for my partner?
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Workflow Question
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aws batch keeps the "Desired vCPUs" high long after they should be reduced
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Snakemake vs. nf vs. CWL
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A note from our sponsor - SaaSHub
www.saashub.com | 8 May 2024
Index
What are some of the best open-source Genomic projects in Nextflow? This list will help you:
| Project | Stars | |
|---|---|---|
| 1 | sarek | 340 |
| 2 | rnaseq-nf | 62 |
| 3 | rare-disease-wf | 56 |
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