Nextflow Annotation

Open-source Nextflow projects categorized as Annotation

Nextflow Annotation Projects

  • sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Project mention: GATK4 automated pipelines in existence? | reddit.com/r/bioinformatics | 2022-03-11

    The sarek pipeline from nf-core might interest you

  • mag

    Assembly and binning of metagenomes

    Project mention: How do you use Termux? | reddit.com/r/termux | 2022-07-16

    So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.

  • SonarQube

    Static code analysis for 29 languages.. Your projects are multi-language. So is SonarQube analysis. Find Bugs, Vulnerabilities, Security Hotspots, and Code Smells so you can release quality code every time. Get started analyzing your projects today for free.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2022-07-16.

Index

Project Stars
1 sarek 225
2 mag 114
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