Top 4 Nextflow Pipeline Projects
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.Project mention: Tkinter for python 3.10 broken on MacOS? | reddit.com/r/Python | 2021-10-07
Not really sure why it's a problem for you, I'm working on rnaseq and they use a very big input dataset, also outputs huge datasets too. It uses docker so you can deploy fast on VMs.
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingProject mention: Workflow Question | reddit.com/r/bioinformatics | 2021-07-09
Scout APM: A developer's best friend. Try free for 14-days. Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.
Assembly and binning of metagenomes (by nf-core)Project mention: Is it possible to assemble a complete bacterial genome using short reads? | reddit.com/r/bioinformatics | 2021-08-09
A fully reproducible and state-of-the-art ancient DNA analysis pipelineProject mention: Generate consensus FASTA files pipeline | reddit.com/r/ngs | 2021-07-14
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
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