rnaseq-nf
patterns
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| rnaseq-nf | patterns | |
|---|---|---|
| 1 | 1 | |
| 62 | 316 | |
| - | 1.3% | |
| 5.8 | 4.5 | |
| 15 days ago | 5 months ago | |
| Nextflow | Nextflow | |
| Mozilla Public License 2.0 | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnaseq-nf
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Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
patterns
What are some alternatives?
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
rare-disease-wf - (WIP) best-practices workflow for rare disease
configs - Config files used to define parameters specific to compute environments at different Institutions
mag - Assembly and binning of metagenomes
atacseq - ATAC-seq peak-calling and QC analysis pipeline
chipseq - ChIP-seq peak-calling, QC and differential analysis pipeline.