patterns
atacseq
Our great sponsors
| patterns | atacseq | |
|---|---|---|
| 1 | 2 | |
| 316 | 160 | |
| 1.3% | 1.9% | |
| 4.5 | 7.0 | |
| 5 months ago | 17 days ago | |
| Nextflow | Nextflow | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
patterns
atacseq
What are some alternatives?
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
atac-seq-pipeline - ENCODE ATAC-seq pipeline
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
methylclock - DNA methylation-based clocks
rnaseq-nf - A proof of concept of RNAseq pipeline
configs - Config files used to define parameters specific to compute environments at different Institutions
AltumAge
mag - Assembly and binning of metagenomes