atacseq VS eager

Compare atacseq vs eager and see what are their differences.

atacseq

ATAC-seq peak-calling and QC analysis pipeline (by nf-core)
nf-core nextflow Workflow atac-seq chromatin-accessibiity Pipeline
Source Code
nf-co.re
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eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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atacseq eager
2 1
160 124
1.9% 1.6%
7.0 7.6
20 days ago 10 days ago
Nextflow Nextflow
MIT License MIT License
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atacseq

Posts with mentions or reviews of atacseq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-02-25.

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

What are some alternatives?

When comparing atacseq and eager you can also consider the following projects:

Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

SqueezeMeta - A complete pipeline for metagenomic analysis

atac-seq-pipeline - ENCODE ATAC-seq pipeline

mag - Assembly and binning of metagenomes

methylclock - DNA methylation-based clocks

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

masurca

AltumAge

patterns - A curated collection of Nextflow implementation patterns

configs - Config files used to define parameters specific to compute environments at different Institutions

atacseq vs Pipeliner eager vs SqueezeMeta atacseq vs atac-seq-pipeline eager vs mag atacseq vs methylclock eager vs sarek atacseq vs rnaseq eager vs masurca atacseq vs AltumAge eager vs patterns atacseq vs patterns eager vs configs