Nextflow Bioinformatics

Open-source Nextflow projects categorized as Bioinformatics | Edit details

Top 4 Nextflow Bioinformatic Projects

  • sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Project mention: Workflow Question | reddit.com/r/bioinformatics | 2021-07-09
  • mag

    Assembly and binning of metagenomes (by nf-core)

    Project mention: Is it possible to assemble a complete bacterial genome using short reads? | reddit.com/r/bioinformatics | 2021-08-09
  • Scout APM

    Less time debugging, more time building. Scout APM allows you to find and fix performance issues with no hassle. Now with error monitoring and external services monitoring, Scout is a developer's best friend when it comes to application development.

  • eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Project mention: Generate consensus FASTA files pipeline | reddit.com/r/ngs | 2021-07-14

    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

  • configs

    Config files used to define parameters specific to compute environments at different Institutions (by nf-core)

    Project mention: Why does it feels impossible to set up github nextflow pipeline without a root? | reddit.com/r/bioinformatics | 2021-07-07

    To pick a random example config file (https://github.com/nf-core/configs/blob/master/conf/cambridge.config) - they have specified that singularity should be used, that the cluster's job scheduler is slurm and the maximum memory/time/cpus.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2021-08-09.

Nextflow Bioinformatics related posts

Index

What are some of the best open-source Bioinformatic projects in Nextflow? This list will help you:

Project Stars
1 sarek 142
2 mag 76
3 eager 61
4 configs 40
Find remote jobs at our new job board 99remotejobs.com. There are 30 new remote jobs listed recently.
Are you hiring? Post a new remote job listing for free.
Static code analysis for 29 languages.
Your projects are multi-language. So is SonarQube analysis. Find Bugs, Vulnerabilities, Security Hotspots, and Code Smells so you can release quality code every time. Get started analyzing your projects today for free.
www.sonarqube.org