Top 4 Nextflow Bioinformatic Projects
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sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
The sarek pipeline from nf-core might interest you
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So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
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InfluxDB
Build time-series-based applications quickly and at scale.. InfluxDB is the Time Series Platform where developers build real-time applications for analytics, IoT and cloud-native services. Easy to start, it is available in the cloud or on-premises.
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configs
Config files used to define parameters specific to compute environments at different Institutions (by nf-core)
Nextflow Bioinformatics related posts
Index
What are some of the best open-source Bioinformatic projects in Nextflow? This list will help you:
Project | Stars | |
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1 | sarek | 224 |
2 | mag | 112 |
3 | eager | 85 |
4 | configs | 60 |