Top 4 Nextflow Bioinformatic Projects
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingProject mention: Workflow Question | reddit.com/r/bioinformatics | 2021-07-09
Assembly and binning of metagenomes (by nf-core)Project mention: Is it possible to assemble a complete bacterial genome using short reads? | reddit.com/r/bioinformatics | 2021-08-09
Less time debugging, more time building. Scout APM allows you to find and fix performance issues with no hassle. Now with error monitoring and external services monitoring, Scout is a developer's best friend when it comes to application development.
A fully reproducible and state-of-the-art ancient DNA analysis pipelineProject mention: Generate consensus FASTA files pipeline | reddit.com/r/ngs | 2021-07-14
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
Config files used to define parameters specific to compute environments at different Institutions (by nf-core)Project mention: Why does it feels impossible to set up github nextflow pipeline without a root? | reddit.com/r/bioinformatics | 2021-07-07
To pick a random example config file (https://github.com/nf-core/configs/blob/master/conf/cambridge.config) - they have specified that singularity should be used, that the cluster's job scheduler is slurm and the maximum memory/time/cpus.
Nextflow Bioinformatics related posts
1 project | reddit.com/r/bioinformatics | 9 Jul 2021
Why does it feels impossible to set up github nextflow pipeline without a root?
1 project | reddit.com/r/bioinformatics | 7 Jul 2021
aws batch keeps the "Desired vCPUs" high long after they should be reduced
1 project | reddit.com/r/aws | 15 Mar 2021
What are some of the best open-source Bioinformatic projects in Nextflow? This list will help you:
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