eager VS masurca

Compare eager vs masurca and see what are their differences.

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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masurca

By alekseyzimin
masurca Genome Assembly Bioinformatics
Source Code
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eager masurca
1 1
124 229
4.0% -
7.6 3.5
5 days ago 2 months ago
Nextflow M4
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

masurca

Posts with mentions or reviews of masurca. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-05-10.

What are some alternatives?

When comparing eager and masurca you can also consider the following projects:

SqueezeMeta - A complete pipeline for metagenomic analysis

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

mag - Assembly and binning of metagenomes

bioinformatics - Bioinformatic algorithms for the UCLA Bioinformatics Specialization

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

patterns - A curated collection of Nextflow implementation patterns

Trycycler - A tool for generating consensus long-read assemblies for bacterial genomes

configs - Config files used to define parameters specific to compute environments at different Institutions

aviary - A hybrid assembly and MAG recovery pipeline (and more!)

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

eager vs SqueezeMeta masurca vs deepvariant eager vs mag masurca vs bioinformatics eager vs sarek masurca vs mag eager vs patterns masurca vs Trycycler eager vs configs masurca vs aviary eager vs rnaseq masurca vs pyrodigal