eager VS SqueezeMeta

Compare eager vs SqueezeMeta and see what are their differences.

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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SqueezeMeta

A complete pipeline for metagenomic analysis (by jtamames)
metagenomics Pipeline metagenomes taxonomic-assignment
Source Code
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eager SqueezeMeta
1 1
124 335
4.0% -
7.6 6.6
5 days ago about 1 month ago
Nextflow C
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

SqueezeMeta

Posts with mentions or reviews of SqueezeMeta. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing eager and SqueezeMeta you can also consider the following projects:

mag - Assembly and binning of metagenomes

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

ttyplot - a realtime plotting utility for terminal/console with data input from stdin

masurca

drep - Rapid comparison and dereplication of genomes

patterns - A curated collection of Nextflow implementation patterns

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

configs - Config files used to define parameters specific to compute environments at different Institutions

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

atacseq - ATAC-seq peak-calling and QC analysis pipeline

chipseq - ChIP-seq peak-calling, QC and differential analysis pipeline.

eager vs mag SqueezeMeta vs mag eager vs sarek SqueezeMeta vs ttyplot eager vs masurca SqueezeMeta vs drep eager vs patterns SqueezeMeta vs MMseqs2 eager vs configs eager vs rnaseq eager vs atacseq eager vs chipseq