Nextflow metagenomics

Open-source Nextflow projects categorized as metagenomics | Edit details
Related topics: #nextflow #Pipeline #Bioinformatics #Workflow #nf-core

Nextflow metagenomic Projects

  • mag

    Assembly and binning of metagenomes (by nf-core)

    Project mention: Is it possible to assemble a complete bacterial genome using short reads? | reddit.com/r/bioinformatics | 2021-08-09

  • eager

    A fully reproducible and state-of-the-art ancient DNA analysis pipeline

    Project mention: Generate consensus FASTA files pipeline | reddit.com/r/ngs | 2021-07-14

    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

  • Scout APM

    Less time debugging, more time building. Scout APM allows you to find and fix performance issues with no hassle. Now with error monitoring and external services monitoring, Scout is a developer's best friend when it comes to application development.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2021-08-09.

Index

Project Stars
1 mag 76
2 eager 61
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