SqueezeMeta VS mag

Compare SqueezeMeta vs mag and see what are their differences.

SqueezeMeta

A complete pipeline for metagenomic analysis (by jtamames)
metagenomics Pipeline metagenomes taxonomic-assignment
Source Code
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mag

Assembly and binning of metagenomes (by nf-core)
Workflow nextflow metagenomics Assembly binning Annotation nf-core Pipeline Bioinformatics nanopore nanopore-sequencing metagenomes long-read-sequencing
Source Code
nf-co.re
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SqueezeMeta mag
1 2
335 182
- 1.6%
6.6 9.4
3 days ago 8 days ago
C Nextflow
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

SqueezeMeta

Posts with mentions or reviews of SqueezeMeta. We have used some of these posts to build our list of alternatives and similar projects.

mag

Posts with mentions or reviews of mag. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-07-16.
  • How do you use Termux?
    3 projects | /r/termux | 16 Jul 2022
    So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
  • Is it possible to assemble a complete bacterial genome using short reads?
    2 projects | /r/bioinformatics | 9 Aug 2021

What are some alternatives?

When comparing SqueezeMeta and mag you can also consider the following projects:

ttyplot - a realtime plotting utility for terminal/console with data input from stdin

atlas - Manage your database schema as code

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

drep - Rapid comparison and dereplication of genomes

spades - SPAdes Genome Assembler

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

nextflow - A DSL for data-driven computational pipelines

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Atlas - 🚀 An open and lightweight modification to Windows, designed to optimize performance, privacy and security.

bgfx - Cross-platform, graphics API agnostic, "Bring Your Own Engine/Framework" style rendering library.

SqueezeMeta vs ttyplot mag vs atlas SqueezeMeta vs eager mag vs rnaseq SqueezeMeta vs drep mag vs spades SqueezeMeta vs MMseqs2 mag vs nextflow mag vs sarek mag vs eager mag vs Atlas mag vs bgfx