mag VS sarek

Compare mag vs sarek and see what are their differences.

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mag sarek
2 5
179 331
6.7% 7.9%
9.5 9.8
7 days ago 6 days ago
Nextflow Nextflow
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

mag

Posts with mentions or reviews of mag. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-07-16.
  • How do you use Termux?
    3 projects | /r/termux | 16 Jul 2022
    So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
  • Is it possible to assemble a complete bacterial genome using short reads?
    2 projects | /r/bioinformatics | 9 Aug 2021

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

What are some alternatives?

When comparing mag and sarek you can also consider the following projects:

SqueezeMeta - A complete pipeline for metagenomic analysis

atlas - A modern tool for managing database schemas

galaxy - Data intensive science for everyone.

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

rnaseq-nf - A proof of concept of RNAseq pipeline

nextflow - A DSL for data-driven computational pipelines

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

spades - SPAdes Genome Assembler

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

configs - Config files used to define parameters specific to compute environments at different Institutions

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow