SqueezeMeta VS eager

Compare SqueezeMeta vs eager and see what are their differences.

SqueezeMeta

A complete pipeline for metagenomic analysis (by jtamames)
metagenomics Pipeline metagenomes taxonomic-assignment
Source Code
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eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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SqueezeMeta eager
1 1
335 124
- 1.6%
6.6 7.6
3 days ago 10 days ago
C Nextflow
GNU General Public License v3.0 only MIT License
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SqueezeMeta

Posts with mentions or reviews of SqueezeMeta. We have used some of these posts to build our list of alternatives and similar projects.

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

What are some alternatives?

When comparing SqueezeMeta and eager you can also consider the following projects:

mag - Assembly and binning of metagenomes

ttyplot - a realtime plotting utility for terminal/console with data input from stdin

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

drep - Rapid comparison and dereplication of genomes

masurca

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

patterns - A curated collection of Nextflow implementation patterns

configs - Config files used to define parameters specific to compute environments at different Institutions

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

atacseq - ATAC-seq peak-calling and QC analysis pipeline

chipseq - ChIP-seq peak-calling, QC and differential analysis pipeline.

SqueezeMeta vs mag eager vs mag SqueezeMeta vs ttyplot eager vs sarek SqueezeMeta vs drep eager vs masurca SqueezeMeta vs MMseqs2 eager vs patterns eager vs configs eager vs rnaseq eager vs atacseq eager vs chipseq