Our great sponsors
-
InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
MetaSpades has a cool option to hybrid reform contigs using short and long reads so you could pair short read data and long read data (PacBio/ONT) to get the best hybrid assembly with high throughput and long reference reads for resolving the reassembling. https://github.com/ablab/spades
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.
Related posts
- what would you choose to detect specific genes in metagenomics data
- question about analysis of metagenome assembled genomes
- Why bother reconstructing MAGs ?
- Point of using Hisat2 build to index reference genomes when working with known genomes mouse/human?
- I used featureCounts to quantify RNA-seq reads and got a low successful alignment percentage. Is this a problem?