Pipeline to analyze ATAC seq

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

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  • Pipeliner

    Discontinued An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

  • atacseq

    ATAC-seq peak-calling and QC analysis pipeline

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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  • atac-seq-pipeline

    ENCODE ATAC-seq pipeline

  • Link to the ENCODE pipeline: https://github.com/ENCODE-DCC/atac-seq-pipeline

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