atacseq
ATAC-seq peak-calling and QC analysis pipeline (by nf-core)
Pipeliner
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster. (by CCBR)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
atacseq
Posts with mentions or reviews of atacseq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-25.
Pipeliner
Posts with mentions or reviews of Pipeliner.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-25.
What are some alternatives?
When comparing atacseq and Pipeliner you can also consider the following projects:
atac-seq-pipeline - ENCODE ATAC-seq pipeline
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
methylclock - DNA methylation-based clocks
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
pipeline-structural-variation - Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
AltumAge
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
patterns - A curated collection of Nextflow implementation patterns
Aging - Epigenomic enrichment analysis of age-related genomic regions
MouseEpigeneticClock
hlatyping - Precision HLA typing from next-generation sequencing data
atacseq vs atac-seq-pipeline
Pipeliner vs chipseq-smk-pipeline
atacseq vs methylclock
Pipeliner vs atac-seq-pipeline
atacseq vs rnaseq
Pipeliner vs pipeline-structural-variation
atacseq vs AltumAge
atacseq vs eager
atacseq vs patterns
atacseq vs Aging
atacseq vs MouseEpigeneticClock
atacseq vs hlatyping