patterns VS sarek

Compare patterns vs sarek and see what are their differences.

patterns

A curated collection of Nextflow implementation patterns (by nextflow-io)
nextflow
Source Code
nextflow-io.github.io
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sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing (by nf-core)
nextflow Workflow Pipeline Bioinformatics Genomics cancer next-generation-sequencing Conda reproducible-research Containers germline somatic variant-calling nf-core gatk4 Annotation whole-genome-sequencing whole-exome-sequencing pre-processing target-panels
Source Code
nf-co.re
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patterns sarek
1 5
316 332
1.3% 3.9%
4.5 9.8
5 months ago 6 days ago
Nextflow Nextflow
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

patterns

Posts with mentions or reviews of patterns. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning patterns yet.
Tracking mentions began in Dec 2020.

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

What are some alternatives?

When comparing patterns and sarek you can also consider the following projects:

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

galaxy - Data intensive science for everyone.

rnaseq-nf - A proof of concept of RNAseq pipeline

mag - Assembly and binning of metagenomes

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

configs - Config files used to define parameters specific to compute environments at different Institutions

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

chipseq - ChIP-seq peak-calling, QC and differential analysis pipeline.

sarek vs GATK sarek vs galaxy sarek vs rnaseq-nf sarek vs mag sarek vs rnatoy sarek vs configs patterns vs rnaseq sarek vs eager sarek vs rnaseq patterns vs eager sarek vs chipseq patterns vs configs