Bwa-mem2 Alternatives

Similar projects and alternatives to bwa-mem2

• htslib

  7 772 9.0 C bwa-mem2 VS htslib

  C library for high-throughput sequencing data formats

  

• minimap2

  5 1,684 7.8 C bwa-mem2 VS minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• bowtie2

  2 618 7.6 C++ bwa-mem2 VS bowtie2

  A fast and sensitive gapped read aligner

• minimap2

  1 0 1.8 C bwa-mem2 VS minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences (by 7PintsOfCherryGarcia)

• edlib

  2 484 1.1 C++ bwa-mem2 VS edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

• vg

  2 1,060 9.4 C++ bwa-mem2 VS vg

  tools for working with genome variation graphs (by vgteam)

  

• megahit

  1 555 0.0 C++ bwa-mem2 VS megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• GenomicSQLite

  1 152 3.4 C++ bwa-mem2 VS GenomicSQLite

  Genomics Extension for SQLite

• seqstats

  1 0 1.8 C bwa-mem2 VS seqstats

  Quick summary statistics on fasta/fastq(.gz) files

• IntaRNA

  1 44 6.6 C++ bwa-mem2 VS IntaRNA

  Efficient target prediction incorporating accessibility of interaction sites