The next version of bwa-mem (by 7PintsOfCherryGarcia)

Bwa-mem2 Alternatives

Similar projects and alternatives to bwa-mem2

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better bwa-mem2 alternative or higher similarity.

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bwa-mem2 reviews and mentions

Posts with mentions or reviews of bwa-mem2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.
  • sqzlib - kseq compatible DNA fastA/Q encoding and compression library
    5 projects | | 21 Nov 2021
    Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.


Basic bwa-mem2 repo stats
8 months ago

7PintsOfCherryGarcia/bwa-mem2 is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

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