Bowtie2 Alternatives

Similar projects and alternatives to bowtie2

• STAR

  8 1,727 5.5 C bowtie2 VS STAR

  RNA-seq aligner

• CHM13

  13 855 4.9 bowtie2 VS CHM13

  The complete sequence of a human genome

  

• WorkOS

  workos.com

  sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• fastp

  9 1,760 3.5 C++ bowtie2 VS fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  

• kraken2

  7 655 5.1 C++ bowtie2 VS kraken2

  The second version of the Kraken taxonomic sequence classification system

• bwa-mem2

  2 674 2.6 C++ bowtie2 VS bwa-mem2

  The next version of bwa-mem

  

• megahit

  1 554 0.0 C++ bowtie2 VS megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

• seq

  15 634 0.7 C++ bowtie2 VS seq

  Discontinued A high-performance, Pythonic language for bioinformatics

  

• InfluxDB

  www.influxdata.com

  sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• IntaRNA

  1 44 6.6 C++ bowtie2 VS IntaRNA

  Efficient target prediction incorporating accessibility of interaction sites

  

• vg

  2 1,056 9.4 C++ bowtie2 VS vg

  tools for working with genome variation graphs (by vgteam)