seqstats

Quick summary statistics on fasta/fastq(.gz) files (by 7PintsOfCherryGarcia)

Seqstats Alternatives

Similar projects and alternatives to seqstats

  1. Klib

    A standalone and lightweight C library

  2. InfluxDB

    InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.

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  3. bwa-mem2

    The next version of bwa-mem (by 7PintsOfCherryGarcia)

  4. sqzlib

    Blocked bases fastX encoding and compression

  5. minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences (by 7PintsOfCherryGarcia)

  6. minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

  7. bwa-mem2

    The next version of bwa-mem

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better seqstats alternative or higher similarity.

seqstats discussion

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seqstats reviews and mentions

Posts with mentions or reviews of seqstats. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.
  • sqzlib - kseq compatible DNA fastA/Q encoding and compression library
    5 projects | /r/bioinformatics | 21 Nov 2021
    Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.

Stats

Basic seqstats repo stats
1
0
1.8
over 3 years ago

7PintsOfCherryGarcia/seqstats is an open source project licensed under MIT License which is an OSI approved license.

The primary programming language of seqstats is C.


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