seqstats

Quick summary statistics on fasta/fastq(.gz) files (by 7PintsOfCherryGarcia)

Seqstats Alternatives

Similar projects and alternatives to seqstats

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better seqstats alternative or higher similarity.

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seqstats reviews and mentions

Posts with mentions or reviews of seqstats. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.
  • sqzlib - kseq compatible DNA fastA/Q encoding and compression library
    5 projects | reddit.com/r/bioinformatics | 21 Nov 2021
    Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.

Stats

Basic seqstats repo stats
1
0
4.1
8 months ago

7PintsOfCherryGarcia/seqstats is an open source project licensed under MIT License which is an OSI approved license.

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