bwa-mem2

The next version of bwa-mem (by 7PintsOfCherryGarcia)

Bwa-mem2 Alternatives

Similar projects and alternatives to bwa-mem2

  • Klib

    A standalone and lightweight C library

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo
  • minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences (by 7PintsOfCherryGarcia)

  • minimap2

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

  • sqzlib

    Blocked bases fastX encoding and compression

  • seqstats

    Quick summary statistics on fasta/fastq(.gz) files

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better bwa-mem2 alternative or higher similarity.

bwa-mem2 discussion

Log in or Post with

bwa-mem2 reviews and mentions

Posts with mentions or reviews of bwa-mem2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.
  • sqzlib - kseq compatible DNA fastA/Q encoding and compression library
    5 projects | /r/bioinformatics | 21 Nov 2021
    Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.

Stats

Basic bwa-mem2 repo stats
1
0
3.2
over 2 years ago

7PintsOfCherryGarcia/bwa-mem2 is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

The primary programming language of bwa-mem2 is C++.


Sponsored
Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com