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Minimap2 Alternatives
Similar projects and alternatives to minimap2
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InfluxDB
InfluxDB high-performance time series database. Collect, organize, and act on massive volumes of high-resolution data to power real-time intelligent systems.
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plots2
a collaborative knowledge-exchange platform in Rails; we welcome first-time contributors! :balloon:
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better minimap2 alternative or higher similarity.
minimap2 discussion
minimap2 reviews and mentions
Posts with mentions or reviews of minimap2.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-11-06.
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Ask HN: Comment here about whatever you're passionate about at the moment
Interested as well! But the future is not so dark, things like e.g. https://github.com/lh3/minimap2 are a breath of fresh air.
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BLAST 10,000 genes?
No experience with this maybe try minimap2(https://github.com/lh3/minimap2) if this doesn't work fall back on blast/blat
- Truncating genome fastas to just overlapping regions
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Alignment of long reads to plasmid and generation of consensus sequence.
You can try minimap2 to align your long reads to your expected plasmid
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Questions about WGS mapping
It sounds like the mapping wasn't very good, you might want to try minimap2 as it is a newer algorithm.
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A note from our sponsor - CodeRabbit
coderabbit.ai | 24 Apr 2025
Stats
Basic minimap2 repo stats
5
1,934
6.6
6 days ago
lh3/minimap2 is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of minimap2 is C.
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