bwa-mem2 VS edlib

Compare bwa-mem2 vs edlib and see what are their differences.

edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance. (by Martinsos)
Our great sponsors
  • InfluxDB - Power Real-Time Data Analytics at Scale
  • WorkOS - The modern identity platform for B2B SaaS
  • SaaSHub - Software Alternatives and Reviews
bwa-mem2 edlib
2 2
673 483
1.3% -
2.6 1.1
4 months ago 12 months ago
C++ C++
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bwa-mem2

Posts with mentions or reviews of bwa-mem2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-06-28.
  • Software Development Project
    2 projects | /r/bioinformatics | 28 Jun 2022
    I’ve recently switched to bwa mem2 and the speed increase is nice for what is basically a drop in replacement (after a bit of validation to make sure that was true). https://github.com/bwa-mem2/bwa-mem2

edlib

Posts with mentions or reviews of edlib. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-01-03.

What are some alternatives?

When comparing bwa-mem2 and edlib you can also consider the following projects:

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

bowtie2 - A fast and sensitive gapped read aligner

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

seq - A high-performance, Pythonic language for bioinformatics

htslib - C library for high-throughput sequencing data formats

vg - tools for working with genome variation graphs

GenomicSQLite - Genomics Extension for SQLite

seqstats - Quick summary statistics on fasta/fastq(.gz) files

IntaRNA - Efficient target prediction incorporating accessibility of interaction sites

nanopolish - Signal-level algorithms for MinION data

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

libnitrokey - Communicate with Nitrokey devices in a clean and easy manner