C++ sequence-alignment

Open-source C++ projects categorized as sequence-alignment

Top 4 C++ sequence-alignment Projects

sequence-alignment
  1. diamond

    Accelerated BLAST compatible local sequence aligner. (by bbuchfink)

  2. InfluxDB

    InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.

    InfluxDB logo
  3. bwa-mem2

    The next version of bwa-mem

  4. edlib

    Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  5. seqan3

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C++ sequence-alignment discussion

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C++ sequence-alignment related posts

  • which database is best to use on BLAST to identify an unknown protein?

    1 project | /r/bioinformatics | 6 Nov 2022
  • Anyone use DRAGEN-GATK?

    1 project | /r/bioinformatics | 12 Oct 2022
  • What's an efficient way to find multiple subsequences in several FASTQs?

    1 project | /r/bioinformatics | 8 Feb 2022

Index

What are some of the best open-source sequence-alignment projects in C++? This list will help you:

# Project Stars
1 diamond 1,155
2 bwa-mem2 760
3 edlib 545
4 seqan3 429

Sponsored
InfluxDB – Built for High-Performance Time Series Workloads
InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.
www.influxdata.com

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