C++ sequence-alignment

Open-source C++ projects categorized as sequence-alignment

Top 4 C++ sequence-alignment Projects

  • diamond

    Accelerated BLAST compatible local sequence aligner. (by bbuchfink)

  • bwa-mem2

    The next version of bwa-mem

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo
  • edlib

    Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  • seqan3

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C++ sequence-alignment related posts

  • which database is best to use on BLAST to identify an unknown protein?

    1 project | /r/bioinformatics | 6 Nov 2022
  • Anyone use DRAGEN-GATK?

    1 project | /r/bioinformatics | 12 Oct 2022
  • What's an efficient way to find multiple subsequences in several FASTQs?

    1 project | /r/bioinformatics | 8 Feb 2022


What are some of the best open-source sequence-alignment projects in C++? This list will help you:

Project Stars
1 diamond 969
2 bwa-mem2 685
3 edlib 484
4 seqan3 389

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