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Diamond Alternatives
Similar projects and alternatives to diamond based on common topics and language
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seqan3
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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edlib
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better diamond alternative or higher similarity.
diamond reviews and mentions
Posts with mentions or reviews of diamond.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-12.
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comparing the similarity between a set of protein sequences
Diamond (https://github.com/bbuchfink/diamond) might help. It has a protein sequence clustering option. You could cluster your sequences and then take the centroids of each cluster. Vary the BLAST parameters to increase/decrease the numbers of clusters.
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which database is best to use on BLAST to identify an unknown protein?
What I usually do is the DIAMOND search (https://github.com/bbuchfink/diamond) on UniRef (50/90) database.
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someone remotely helped me to download and execute this file called a diamond.exe from the following link: https://github.com/bbuchfink/diamond Windows said it could be unsafe so I disabled Windows Defender and pressed run on it but it didn't do anything, is this a virus is it safe?
someone remotely helped me to download and execute this file called a diamond.exe from the following link: https://github.com/bbuchfink/diamond Windows said it could be unsafe so I disabled Windows Defender and pressed run on it but it didn't do anything, is this a virus is it safe?
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www.influxdata.com | 10 May 2024
Stats
Basic diamond repo stats
3
962
6.3
3 months ago
bbuchfink/diamond is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.
The primary programming language of diamond is C++.
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