The next version of bwa-mem
I’ve recently switched to bwa mem2 and the speed increase is nice for what is basically a drop in replacement (after a bit of validation to make sure that was true). https://github.com/bwa-mem2/bwa-mem2
C library for high-throughput sequencing data formats
Another idea is add in reading cloud data natively e.g. htslib which samtools relies on can read s3 directly. https://github.com/samtools/htslib
Clean code begins in your IDE with SonarLint. Up your coding game and discover issues early. SonarLint is a free plugin that helps you find & fix bugs and security issues from the moment you start writing code. Install from your favorite IDE marketplace today.
Tips for scalable workflows on AWS
3 projects | dev.to | 1 Jul 2022
Interested in Bioinformatics / C pair-programming opportunity / learning / portfolio project.
1 project | reddit.com/r/cscareerquestions | 13 Aug 2021
Does anyone know of a repository for actual genetic data?
2 projects | reddit.com/r/genetics | 5 Nov 2022
Pigz: A parallel implementation of gzip for multi-core machines
5 projects | news.ycombinator.com | 17 Oct 2022
4 projects | dev.to | 26 Jul 2021