Software Development Project

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
Htslib Bioinformatics Sam bam cram

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  • bwa-mem2

    The next version of bwa-mem

    • I’ve recently switched to bwa mem2 and the speed increase is nice for what is basically a drop in replacement (after a bit of validation to make sure that was true). https://github.com/bwa-mem2/bwa-mem2

  • htslib

    C library for high-throughput sequencing data formats

    • Another idea is add in reading cloud data natively e.g. htslib which samtools relies on can read s3 directly. https://github.com/samtools/htslib

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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