bwa-mem2 VS vg

Compare bwa-mem2 vs vg and see what are their differences.

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bwa-mem2 vg
2 2
673 1,055
1.3% 1.2%
2.6 9.4
4 months ago 5 days ago
C++ C++
GNU General Public License v3.0 or later GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bwa-mem2

Posts with mentions or reviews of bwa-mem2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-06-28.
  • Software Development Project
    2 projects | /r/bioinformatics | 28 Jun 2022
    I’ve recently switched to bwa mem2 and the speed increase is nice for what is basically a drop in replacement (after a bit of validation to make sure that was true). https://github.com/bwa-mem2/bwa-mem2

vg

Posts with mentions or reviews of vg. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning vg yet.
Tracking mentions began in Dec 2020.

What are some alternatives?

When comparing bwa-mem2 and vg you can also consider the following projects:

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

bowtie2 - A fast and sensitive gapped read aligner

minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences

QuickQanava - :link: C++17 network / graph visualization library - Qt6 / QML node editor.

euler - A distributed graph deep learning framework.

htslib - C library for high-throughput sequencing data formats

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

seqstats - Quick summary statistics on fasta/fastq(.gz) files

GenomicSQLite - Genomics Extension for SQLite

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

IntaRNA - Efficient target prediction incorporating accessibility of interaction sites

seq - A high-performance, Pythonic language for bioinformatics