vg VS seq

Compare vg vs seq and see what are their differences.

vg

tools for working with genome variation graphs (by vgteam)
variation-graph Graph genome-graph Genomics Dna
Source Code
biostars.org
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seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
Bioinformatics computational-biology Genomics programming-language Domain-specific language Compiler Python

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vg seq
2 15
1,060 634
0.9% -
9.4 0.7
7 days ago over 1 year ago
C++ C++
GNU General Public License v3.0 or later Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

vg

Posts with mentions or reviews of vg. We have used some of these posts to build our list of alternatives and similar projects.
  • VG v1.36.0 just released!
    1 project | /r/UCSC | 11 Nov 2021
    Just released! VG v1.36.0, available at https://github.com/vgteam/vg/releases/tag/v1.36.0 offers improvements vg clip, including an option for clipping out big deletion edges while skipping multiple specified alleles.
  • VG v1.34.0 Release!
    1 project | /r/UCSC | 18 Aug 2021
    Just out! vg v1.34.0 code-named "Arguello" is available now: https://github.com/vgteam/vg/releases/tag/v1.34.0

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

What are some alternatives?

When comparing vg and seq you can also consider the following projects:

QuickQanava - :link: C++17 network / graph visualization library - Qt6 / QML node editor.

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

euler - A distributed graph deep learning framework.

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

bwa-mem2 - The next version of bwa-mem

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

bowtie2 - A fast and sensitive gapped read aligner

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

Biopython - Official git repository for Biopython (originally converted from CVS)

seq-genomics - Coursera Bioinformatics / Stepik Genome Sequencing with seq-lang

qore - Qore Programming Language

vg vs QuickQanava seq vs Nim vg vs euler seq vs adam vg vs bwa-mem2 seq vs edlib vg vs bowtie2 seq vs wyng-backup seq vs Biopython seq vs bowtie2 seq vs seq-genomics seq vs qore