seq VS bowtie2

Compare seq vs bowtie2 and see what are their differences.

seq

A high-performance, Pythonic language for bioinformatics (by seq-lang)
Bioinformatics computational-biology Genomics programming-language Domain-specific language Compiler Python

DISCONTINUED

Suggest alternative
Edit details

bowtie2

A fast and sensitive gapped read aligner (by BenLangmead)
Bioinformatics read-aligners Genomics C++
Source Code
Suggest alternative
Edit details
WorkOS
Our great sponsors
  • WorkOS - The modern identity platform for B2B SaaS
  • InfluxDB - Power Real-Time Data Analytics at Scale
  • SaaSHub - Software Alternatives and Reviews
Our great sponsors
seq bowtie2
15 2
634 615
- -
0.7 7.6
over 1 year ago about 2 months ago
C++ C++
Apache License 2.0 GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

seq

Posts with mentions or reviews of seq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-20.

bowtie2

Posts with mentions or reviews of bowtie2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-09-14.

What are some alternatives?

When comparing seq and bowtie2 you can also consider the following projects:

Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).

STAR - RNA-seq aligner

adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

bwa-mem2 - The next version of bwa-mem

wyng-backup - Fast Time Machine-like backups for logical volumes & disk images

megahit - Ultra-fast and memory-efficient (meta-)genome assembler

edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

kraken2 - The second version of the Kraken taxonomic sequence classification system

Biopython - Official git repository for Biopython (originally converted from CVS)

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

bioconda-recipes - Conda recipes for the bioconda channel.

IntaRNA - Efficient target prediction incorporating accessibility of interaction sites

seq vs Nim bowtie2 vs STAR seq vs adam bowtie2 vs bwa-mem2 seq vs wyng-backup bowtie2 vs megahit seq vs edlib bowtie2 vs kraken2 seq vs Biopython bowtie2 vs fastp seq vs bioconda-recipes bowtie2 vs IntaRNA