seq
seq-genomics
Our great sponsors
seq | seq-genomics | |
---|---|---|
15 | 1 | |
634 | 2 | |
- | - | |
0.7 | 0.0 | |
over 1 year ago | about 4 years ago | |
C++ | ||
Apache License 2.0 | - |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
seq
- Bioinformatics programming language
-
A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
https://github.com/seq-lang/seq
- Seq – A programming language for computational genomics and bioinformatics
-
Hacker News top posts: Sep 15, 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
-
Seq: A programming language for high-performance computational genomics
They support both, and will deprecate Python 2 style soon.
https://github.com/seq-lang/seq/issues/223
seq-genomics
-
Seq: A programming language for high-performance computational genomics
Used it for coding Coursera/Stepik's Bioinformatics course [1] when it was first announced 2 years ago.
Not claiming it as any sort of reference, but you can see how it [2] may be used to solve some basic genome sequencing.
[1] https://www.coursera.org/specializations/bioinformatics
[2] https://github.com/fuzzthink/seq-genomics
What are some alternatives?
Nim - Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness, and elegance (in that order of priority).
bioconda-recipes - Conda recipes for the bioconda channel.
adam - ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
wyng-backup - Fast Time Machine-like backups for logical volumes & disk images
nimconf2021 - Slides for Nimconf21
edlib - Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
Biopython - Official git repository for Biopython (originally converted from CVS)
bowtie2 - A fast and sensitive gapped read aligner
qore - Qore Programming Language
poly - A Go package for engineering organisms.