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IntaRNA reviews and mentions
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IntaRNA optimization
There might be, the code is open source (https://github.com/BackofenLab/IntaRNA/) so just download it, and run it through a code profiler, see where most of the runtime is spend and optimise the code.
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BackofenLab/IntaRNA is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of IntaRNA is C++.
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