IntaRNA
Efficient target prediction incorporating accessibility of interaction sites (by BackofenLab)
seq
A high-performance, Pythonic language for bioinformatics (by seq-lang)
IntaRNA | seq | |
---|---|---|
1 | 15 | |
44 | 634 | |
- | - | |
7.2 | 0.7 | |
9 days ago | over 1 year ago | |
C++ | C++ | |
GNU General Public License v3.0 or later | Apache License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
IntaRNA
Posts with mentions or reviews of IntaRNA.
We have used some of these posts to build our list of alternatives
and similar projects.
-
IntaRNA optimization
There might be, the code is open source (https://github.com/BackofenLab/IntaRNA/) so just download it, and run it through a code profiler, see where most of the runtime is spend and optimise the code.
seq
Posts with mentions or reviews of seq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-20.
- Bioinformatics programming language
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A Python-based programming language for high-performance computational genomics
> Seq is a Python-compatible language, and the vast majority of Python programs should work without any modifications
https://github.com/seq-lang/seq
- Seq – A programming language for computational genomics and bioinformatics
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Hacker News top posts: Sep 15, 2021
Seq: A programming language for high-performance computational genomics\ (17 comments)
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Seq: A programming language for high-performance computational genomics
They support both, and will deprecate Python 2 style soon.
https://github.com/seq-lang/seq/issues/223