GTDBTk Alternatives

Similar projects and alternatives to GTDBTk

• CAT_pack

  1 158 8.5 Python GTDBTk VS CAT_pack

  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

  

• kraken-biom

  1 43 0.0 Python GTDBTk VS kraken-biom

  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• MMseqs2

  4 1,251 7.7 C GTDBTk VS MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  

• classify-genomes

  1 7 0.0 Python GTDBTk VS classify-genomes

  Classify a genome sequence according to the mOTUs/specI taxonomy

• dada2

  1 446 4.3 R GTDBTk VS dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

• bakta

  1 389 8.5 Python GTDBTk VS bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

• pyani

  1 180 8.5 Python GTDBTk VS pyani

  Application and Python module for average nucleotide identity analyses of microbes.

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• phantasm

  2 20 8.6 Python GTDBTk VS phantasm

  PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes