GTDBTk VS phantasm

Compare GTDBTk vs phantasm and see what are their differences.

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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phantasm

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)
Bioinformatics phylogenomics taxonomy microbiology
Source Code
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GTDBTk phantasm
1 2
435 20
4.4% -
7.5 8.6
16 days ago 5 months ago
Python Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
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GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

phantasm

Posts with mentions or reviews of phantasm. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-02.

What are some alternatives?

When comparing GTDBTk and phantasm you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

drep - Rapid comparison and dereplication of genomes

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

misp-taxonomies - Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

pyani - Application and Python module for average nucleotide identity analyses of microbes.

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

GTDBTk vs kraken-biom phantasm vs drep GTDBTk vs CAT_pack phantasm vs misp-taxonomies GTDBTk vs MMseqs2 phantasm vs pyani GTDBTk vs dada2 GTDBTk vs classify-genomes GTDBTk vs bakta GTDBTk vs pyani