Python Phylogenetics

Open-source Python projects categorized as Phylogenetics

Top 5 Python Phylogenetic Projects

  • Biopython

    Official git repository for Biopython (originally converted from CVS)

    Project mention: Invitación a proyecto - Biopython en Español | /r/devsarg | 2023-07-23
  • ete

    Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  • GTDBTk

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  • taxopedia

    Taxonomic trees (cladograms) from Wikipedia-scraped data.

  • ielex-data-and-tree

    Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-07-23.

Python Phylogenetics related posts

Index

What are some of the best open-source Phylogenetic projects in Python? This list will help you:

Project Stars
1 Biopython 4,120
2 ete 747
3 GTDBTk 411
4 taxopedia 7
5 ielex-data-and-tree 6
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