Top 3 Python microbiology Projects

pyGenomeViz

1 3 315 8.7 Python

A genome visualization python package for comparative genomics
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drep

2 1 277 3.5 Python

Rapid comparison and dereplication of genomes (by MrOlm)
phantasm

3 2 24 8.6 Python

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python microbiology discussion

Python microbiology related posts

Is there any way to easily create a docker image that has both python and R?

2 projects | /r/bioinformatics | 2 Apr 2023
How to dereplicate MAGs? (metagenome assembly genomes)

2 projects | /r/bioinformatics | 25 Jul 2021

Index

What are some of the best open-source microbiology projects in Python? This list will help you:

#	Project	Stars
1	pyGenomeViz	315
2	drep	277
3	phantasm	24

Python microbiology

Top 3 Python microbiology Projects

pyGenomeViz

CodeRabbit

drep

phantasm

Python microbiology discussion

Python microbiology related posts

Is there any way to easily create a docker image that has both python and R?

How to dereplicate MAGs? (metagenome assembly genomes)

Index

Did you know that Python is the 2nd most popular programming language based on number of references?

Did you know that Python is
the 2nd most popular programming language
based on number of references?