Python microbiology

Open-source Python projects categorized as microbiology
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Topics: Bioinformatics Visualization Matplotlib Genomics Assembly
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Top 3 Python microbiology Projects

  • drep

    Rapid comparison and dereplication of genomes (by MrOlm)

  • pyGenomeViz

    A genome visualization python package for comparative genomics

  • InfluxDB

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  • phantasm

    PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python microbiology related posts

  • Is there any way to easily create a docker image that has both python and R?

    2 projects | /r/bioinformatics | 2 Apr 2023

  • How to dereplicate MAGs? (metagenome assembly genomes)

    2 projects | /r/bioinformatics | 25 Jul 2021

Index

What are some of the best open-source microbiology projects in Python? This list will help you:

Project Stars
1 drep 237
2 pyGenomeViz 227
3 phantasm 20

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