pyGenomeViz Alternatives

Similar projects and alternatives to pyGenomeViz

mummer

2 419 0.0 C++ pyGenomeViz VS mummer

Mummer alignment tool
gggenomes

3 550 8.6 R pyGenomeViz VS gggenomes

A grammar of graphics for comparative genomics
WorkOS

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itermplot

2 1,480 0.0 Python pyGenomeViz VS itermplot

An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
DnaFeaturesViewer

2 547 5.9 Python pyGenomeViz VS DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
pyCirclize

6 604 8.6 Python pyGenomeViz VS pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
FastANI

1 344 3.7 C++ pyGenomeViz VS FastANI

Fast Whole-Genome Similarity (ANI) Estimation
AGAT

1 408 7.2 Perl pyGenomeViz VS AGAT

Another Gtf/Gff Analysis Toolkit
InfluxDB

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Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
tinycov

1 13 1.5 Python pyGenomeViz VS tinycov

Command line tool to plot genomic coverage from a BAM file
clinker

2 501 3.2 Python pyGenomeViz VS clinker

Gene cluster comparison figure generator
ncbi-genome-download

4 887 5.7 Python pyGenomeViz VS ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better pyGenomeViz alternative or higher similarity.

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pyGenomeViz reviews and mentions

Posts with mentions or reviews of pyGenomeViz. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-01.

How to perform Genome Alignment ?
2 projects | /r/bioinformatics | 1 Oct 2022

Do you want to perform a whole genome alignment between species? I often use the following software for genome alignment in prokaryotes and viruses. - MUMmer (pairwise genome Aligner) - progressiveMauve (Multiple Genome Aligner) Due to the high mutation frequency of viral genomes, it is sometimes difficult to compare them at the nucleotide sequence level. Therefore, it may be better to make comparisons at the protein level with MUMmer for viral genomes. I have recently developed the software pyGenomeViz, which automates the process of performing and visualizing whole genome alignments, so check it out if it seems to fit your needs.
Software to make in-scale illustrations of genomic locations
3 projects | /r/bioinformatics | 10 Sep 2022

If you can build a Python environment and do a little coding, DnaFeaturesViewer or pyGenomeViz would be good choices. You can generate the following figure from a Genbank file with about 10 lines of code. Of course, you can specify the range of coordinates to be plotted.
pyGenomeViz: A genome visualization python package for comparative genomics
3 projects | /r/bioinformatics | 2 Aug 2022

GitHub repo: https://github.com/moshi4/pyGenomeViz
A note from our sponsor - InfluxDB
www.influxdata.com | 29 Apr 2024

Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

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228

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Last Commit

6 months ago

moshi4/pyGenomeViz is an open source project licensed under MIT License which is an OSI approved license.

The primary programming language of pyGenomeViz is Python.

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