Python comparative-genomics

Open-source Python projects categorized as comparative-genomics
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Topics: Genomics Visualization Matplotlib Python Bioinformatics
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Top 3 Python comparative-genomic Projects

  • pyCirclize

    Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  • funannotate

    Eukaryotic Genome Annotation Pipeline

    • Project mention: Annotation of fungal genomes | /r/bioinformatics | 2023-06-05

    funannotate is an annotation package designed for fungi, but also works for eukaryotes too.

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  • pyGenomeViz

    A genome visualization python package for comparative genomics

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python comparative-genomics related posts

  • How to perform Genome Alignment ?

    2 projects | /r/bioinformatics | 1 Oct 2022

  • Software to make in-scale illustrations of genomic locations

    3 projects | /r/bioinformatics | 10 Sep 2022

  • pyGenomeViz: A genome visualization python package for comparative genomics

    3 projects | /r/bioinformatics | 2 Aug 2022

  • If you’re going to publish a tool, please actively maintain it, put up a hiatus notice, or discontinue it. . .

    3 projects | /r/bioinformatics | 11 Mar 2022

Index

What are some of the best open-source comparative-genomic projects in Python? This list will help you:

Project Stars
1 pyCirclize 610
2 funannotate 289
3 pyGenomeViz 227

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