If you’re going to publish a tool, please actively maintain it, put up a hiatus notice, or discontinue it. . .

• funannotate

  2 292 6.6 Python

  Eukaryotic Genome Annotation Pipeline

While we are at it, Jon Palmer, the maintainer/author of Funannotate, is very responsive, super nice, and maintains an extremely complicated code base.

• bracer

  2 37 7.3 Python

  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data (by Teichlab)

  

A perfect example of Nature Methods bit is bracer. I was so stoked they released it because it basically solved all the problems I was trying to do with an analysis. Couldn't get it installed for the life of me and no response from GitHub issues. Tried conda. Tried installing everything manually. Good thing TRUST4 was around to save the day and the maintainer was really responsive whenever I had questions.

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• TRUST4

  2 255 8.1 C

  TCR and BCR assembly from RNA-seq data

A perfect example of Nature Methods bit is bracer. I was so stoked they released it because it basically solved all the problems I was trying to do with an analysis. Couldn't get it installed for the life of me and no response from GitHub issues. Tried conda. Tried installing everything manually. Good thing TRUST4 was around to save the day and the maintainer was really responsive whenever I had questions.

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