Annotation of fungal genomes

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
genome-annotation gene-models comparative-genomics ncbi-submission

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  • funannotate

    Eukaryotic Genome Annotation Pipeline

    • funannotate is an annotation package designed for fungi, but also works for eukaryotes too.

  • BRAKER

    BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

    • Braker looks reasonable, though I only really have been doing bacterial genome annotation.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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