Mummer Alternatives
Similar projects and alternatives to mummer
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better mummer alternative or higher similarity.
mummer reviews and mentions
Posts with mentions or reviews of mummer.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-01.
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How to perform Genome Alignment ?
Do you want to perform a whole genome alignment between species? I often use the following software for genome alignment in prokaryotes and viruses. - MUMmer (pairwise genome Aligner) - progressiveMauve (Multiple Genome Aligner) Due to the high mutation frequency of viral genomes, it is sometimes difficult to compare them at the nucleotide sequence level. Therefore, it may be better to make comparisons at the protein level with MUMmer for viral genomes. I have recently developed the software pyGenomeViz, which automates the process of performing and visualizing whole genome alignments, so check it out if it seems to fit your needs.
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MSA of whole bacterial genomes, how do I do it?
I often used the following tools for prokaryotic genome alignment. Genome alignment between two species => MUMmer (pairwise genome aligner)
Stats
Basic mummer repo stats
2
424
0.0
about 2 months ago
mummer4/mummer is an open source project licensed under Artistic License 2.0 which is an OSI approved license.
The primary programming language of mummer is C++.
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