Python genomics-visualization

Open-source Python projects categorized as genomics-visualization
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Topics: Genomics Bioinformatics Matplotlib Visualization Python
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Top 4 Python genomics-visualization Projects

  • pyCirclize

    Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  • pyGenomeViz

    A genome visualization python package for comparative genomics

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

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  • edgecase

    A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

  • tinycov

    Command line tool to plot genomic coverage from a BAM file

    • Project mention: Bam viewer with custom fasta reference that's embeddable in Streamlit app? | /r/bioinformatics | 2023-06-30

    tinycov I keep finding these small tools built with python, but with no API available, so they require a combination of CLI and Docker to work

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python genomics-visualization related posts

Index

What are some of the best open-source genomics-visualization projects in Python? This list will help you:

Project Stars
1 pyCirclize 604
2 pyGenomeViz 228
3 edgecase 14
4 tinycov 13

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