Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →
Ncbi-genome-download Alternatives
Similar projects and alternatives to ncbi-genome-download
-
-
InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
-
OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
-
-
SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
-
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better ncbi-genome-download alternative or higher similarity.
ncbi-genome-download reviews and mentions
Posts with mentions or reviews of ncbi-genome-download.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-08-02.
-
I have a question about the FTP of annotation files from NCBI's Genbank and RefSeq
If you have the taxonomic IDs of your organisms of interest, there are existing parallelized download tools that are more efficient like https://github.com/kblin/ncbi-genome-download or bit-dl-ncbi-assemblies from https://github.com/AstrobioMike/bit
-
Bioinformatics without a lab
Downloading from NCBI can be pretty wonky though, but third parties have made good programs to deal with. As an example - and a personal favorite - you have https://github.com/kblin/ncbi-genome-download which by far is the easiest way to download various assembled genomes.
-
Downloading genomes from database via command line FTP
I know you said Ensembl, but if you can live with NCBI, I would suggest https://github.com/kblin/ncbi-genome-download
-
Downloading viral genomes programmatically
Useful tool to download from NCBI: ncbi-genome-download
-
A note from our sponsor - InfluxDB
www.influxdata.com | 4 May 2024
Stats
Basic ncbi-genome-download repo stats
4
890
5.7
9 months ago
kblin/ncbi-genome-download is an open source project licensed under Apache License 2.0 which is an OSI approved license.
The primary programming language of ncbi-genome-download is Python.
Popular Comparisons
- ncbi-genome-download VS galaxy
- ncbi-genome-download VS clinker
- ncbi-genome-download VS pyfaidx
- ncbi-genome-download VS gisaid-uploader
- ncbi-genome-download VS OpenWorm
- ncbi-genome-download VS Biopython
- ncbi-genome-download VS UPIMAPI
- ncbi-genome-download VS eggnog-mapper
- ncbi-genome-download VS bit
- ncbi-genome-download VS goatools
Sponsored
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com